Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

Microbiome
Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Annelies Geirnaert, Rachelle Prantil-Baun, Diogo M. Camacho, David B. Chou, Sasan Jalili-Firoozinezhad, Tomás de Wouters, Magdalena Kasendra, Michael Super, Mark J. Cartwright, Camilla A. Richmond, David T. Breault, Christophe Lacroix and Donald E. IngberEmail authorView ORCID ID profile
Nature
Particle robotics based on statistical mechanics of loosely coupled components

Shuguang Li, Richa Batra, David Brown, Hyun-Dong Chang, Nikhil Ranganathan, Chuck Hoberman, Daniela Rus & Hod Lipson
Nature
Diverse and robust molecular algorithms using reprogrammable DNA self-assembly

Damien Woods, David Doty, Cameron Myhrvold, Joy Hui, Felix Zhou, Peng Yin & Erik Winfree
JoVE
Cell-free Protein Expression Using the Rapidly Growing Bacterium Vibrio natriegens

Daniel J. Wiegand, Henry H. Lee, Nili Ostrov, George M. Church
Cell
Steroid Hormone Function Controls Non-competitive Plasmodium Development in Anopheles

Kristine Werling, W. Robert Shaw, Maurice A. Itoe, Kathleen A. Westervelt, Perrine Marcenac, Douglas G. Paton, Duo Peng, Naresh Singh, Andrea L. Smidler, Adam South, Amy A. Deik, Liliana Mancio-Silva, Allison R. Demas, Sandra March, Eric Calvo, Sangeeta N.Bhatia, Clary B. Clish, Flaminia Catteruccia
Nano Letters
124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics

Wade OK, Woehrstein JB, Nickels PC, Strauss S, Stehr F, Stein J, Schueder F, Strauss MT, Ganji M, Schnitzbauer J, Grabmayr H, Yin P, Schwille P, Jungmann R
Nature Methods
A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria

Jonathan M. Stokes, Arnaud Gutierrez, Allison J. Lopatkin, Ian W. Andrews, Shawn French, Ivan Matic, Eric D. Brown & James J. Collins
Genome Research
Accurate analysis of genuine CRISPR editing events with ampliCan

Labun K, Guo X, Chavez A, Church G, Gagnon JA, Valen E
PNAS
Renal reabsorption in 3D vascularized proximal tubule models

Neil Y. C. Lin, Kimberly A. Homan, Sanlin S. Robinson, David B. Kolesky, Nathan Duarte, Annie Moisan, and Jennifer A. Lewis
Genome Medicine
Predispositional genome sequencing in healthy adults: design, participant characteristics, and early outcomes of the PeopleSeq Consortium.

Emilie S. Zoltick, Michael D. Linderman, Molly A. McGinniss, Erica Ramos, Madeleine P. Ball, George M. Church, Debra G. B. Leonard, Stacey Pereira, Amy L. McGuire, C. Thomas Caskey, Saskia C. Sanderson, Eric E. Schadt, Daiva E. Nielsen, Scott D. Crawford, Robert C. Green and for the PeopleSeq Consortium
Journal of Molecular Biology
Electrostatic Steering Enables Flow-Activated von Willebrand Factor to Bind Platelet Glycoprotein, Revealed by Single-Molecule Stretching and Imaging

Jiang Y, Fu H, Springer TA, Wong WP
Nature Reviews Nephrology
Modelling diabetic vasculopathy with human vessel organoids

Ryuji Morizane
Science Translational Medicine
Platelet decoys inhibit thrombosis and prevent metastatic tumor formation in preclinical models

Anne-Laure Papa, Amanda Jiang, Netanel Korin, Michelle B. Chen, Erin T. Langan, Anna Waterhouse, Emma Nash, Jildaz Caroff, Amanda Graveline, Andyna Vernet, Akiko Mammoto, Tadanori Mammoto, Abhishek Jain, Roger D. Kamm, Matthew J. Gounis and Donald E. Ingber
Nature Methods
Flow-enhanced vascularization and maturation of kidney organoids in vitro

Kimberly A. Homan, Navin Gupta, Katharina T. Kroll, David B. Kolesky, Mark Skylar-Scott, Tomoya Miyoshi, Donald Mau, M. Todd Valerius, Thomas Ferrante, Joseph V. Bonventre, Jennifer A. Lewis & Ryuji Morizane
Nature Biotechnology
An injectable bone marrow–like scaffold enhances T cell immunity after hematopoietic stem cell transplantation

Article | Published: 11 February 2019 An injectable bone marrow–like scaffold enhances T cell immunity after hematopoietic stem cell transplantation Nisarg J. Shah, Angelo S. Mao, Ting-Yu Shih, Matthew D. Kerr, Azeem Sharda, Theresa M. Raimondo, James C. Weaver, Vladimir D. Vrbanac, Maud Deruaz, Andrew M. Tager, David J. Mooney & David T. Scadden
Cell
Designer Assays for Your Sick, Subdivided Heart.

Kevin KitParker
Scientific Reports
Effect of Chemical Permeation Enhancers on Skin Permeability: In silico screening using Molecular Dynamics simulations

Rakesh Gupta, Balarama Sridhar Dwadasi, Beena Rai & Samir Mitragotri
OncoImmunology
Anti-tumor immunity induced by ectopic expression of viral antigens is transient and limited by immune escape

Neeraja Dharmaraj, Stacey L. Piotrowski, Chen Huang, Jared M. Newton, Leonard S. Golfman, Aurelie Hanoteau, Sandeep T. Koshy, Aileen W. Li, Merlyn X. Pulikkathara, Bing Zhang, Jared K. Burks, David J. Mooney, Yu L. Lei, Andrew G. Sikora & Simon Young
Lab on a Chip
Modular soft robotic microdevices for dexterous biomanipulation.

Özkale B, Parreira R, Bekdemir A, Pancaldi L, Özelçi E, Amadio C, Kaynak M, Stellacci F, Mooney DJ, Sakar MS
Journal of the Royal Society Interface
An insect-inspired collapsible wing hinge dampens collision-induced body rotation rates in a microrobot

Andrew M. Mountcastle , E. Farrell Helbling and Robert J. Wood