Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

October 12, 2020
Advanced Science
Is it Time for Reviewer 3 to Request Human Organ Chip Experiments Instead of Animal Validation Studies?

Donald E. Ingber
August 15, 2020
Communicative & Integrative Biology
Emergence of informative higher scales in biological systems: a computational toolkit for optimal prediction and control

Erik Hoel, Michael Levin
October 5, 2020
Journal for ImmunoTherapy of Cancer
Plasma IL-6 changes correlate to PD-1 inhibitor responses in NSCLC

Alissa Keegan, Biagio Ricciuti, Padric Garden, Limor Cohen, Reiko Nishihara, Anika Adeni, Cloud Paweletz, Julianna Supplee, Pasi A Jänne, Mariano Severgnini, Mark M Awad and David R Walt
October 5, 2020
PNAS
Extracellular matrix plasticity as a driver of cell spreading

Joshua M. Grolman, Philipp Weinand, and David J. Mooney
October 6, 2020
Nature Communications
In situ reprogramming of gut bacteria by oral delivery

Bryan B. Hsu, Isaac N. Plant, Lorena Lyon, Frances M. Anastassacos, Jeffrey C. Way & Pamela A. Silver
October 7, 2020
Nature Communications
A deep learning approach to programmable RNA switches

Nicolaas M. Angenent-Mari, Alexander S. Garruss, Luis R. Soenksen, George Church & James J. Collins
October 7, 2020
Nature Communications
Sequence-to-function deep learning frameworks for engineered riboregulators

Jacqueline A. Valeri, Katherine M. Collins, Pradeep Ramesh, Miguel A. Alcantar, Bianca A. Lepe, Timothy K. Lu & Diogo M. Camacho
September 25, 2020
Macromolecular Rapid Communications
Multifunctional Synthetic Protein Nanoparticles via Reactive Electrojetting

Daniel F. Quevedo, Nahal Habibi, Jason V. Gregory, Yazmin Hernandez, Tyler D. Brown, Rikako Miki, Bradley N. Plummer, Sahar Rahmani, Jeffery E. Raymond, Samir Mitragotri, Joerg Lahann
September 26, 2020
Advanced Drug Delivery Reviews
Engineered tissues and strategies to overcome challenges in drug development

Andrew S Khalil, Rudolf Jaenisch, David J Mooney
September 21, 2020
PNAS
Ultrasensitive CRISPR-based diagnostic for field-applicable detection of Plasmodium species in symptomatic and asymptomatic malaria

Rose A. Lee, Helena De Puig, Peter Q. Nguyen, Nicolaas M. Angenent-Mari, Nina M. Donghia, James P. McGee, Jeffrey D. Dvorin, Catherine M. Klapperich, Nira R. Pollock, and James J. Collins
September 18, 2020
Nature Biomedical Engineering
Ultrasensitive high-resolution profiling of early seroconversion in patients with COVID-19

Maia Norman, Tal Gilboa, Alana F. Ogata, Adam M. Maley, Limor Cohen, Evan L. Busch, Roey Lazarovits, Chih-Ping Mao, Yongfei Cai, Jun Zhang, Jared E. Feldman, Blake M. Hauser, Timothy M. Caradonna, Bing Chen, Aaron G. Schmidt, Galit Alter, Richelle C. Charles, Edward T. Ryan & David R. Walt
September 21, 2020
Advanced Materials
Shape Changing Robots: Bioinspiration, Simulation, and Physical Realization

Dylan Shah Bilige Yang Sam Kriegman Michael Levin Josh Bongard Rebecca Kramer‐Bottiglio
September 19, 2020
Metabolic Engineering
Valorization of CO2 through lithoautotrophic production of sustainable chemicals in Cupriavidus necator

Shannon N Nangle, Marika Ziesack, Sarabeth Buckley, Disha Trivedi, Daniel M Loh, Daniel G Nocera, Pamela A Silver
September 24, 2020
Advanced Intelligent Systems
Machine Learning‐Driven Bioelectronics for Closed‐Loop Control of Cells

John Selberg Mohammad Jafari Juanita Mathews Manping Jia Pattawong Pansodtee Harika Dechiraju Chunxiao Wu Sergio Cordero Alexander Flora Nebyu Yonas Sophia Jannetty Miranda Diberardinis Mircea Teodorescu Michael Levin Marcella Gomez Marco Rolandi
September 21, 2020
Nature Materials
Mechanically robust lattices inspired by deep-sea glass sponges

Matheus C. Fernandes, Joanna Aizenberg, James C. Weaver & Katia Bertoldi
September 21, 2020
Nature Digital Medicine
Enabling precision rehabilitation interventions using wearable sensors and machine learning to track motor recovery

Catherine Adans-Dester, Nicolas Hankov, Anne O’Brien, Gloria Vergara-Diaz, Randie Black-Schaffer, Ross Zafonte, Jennifer Dy, Sunghoon I. Lee & Paolo Bonato
May 21, 2019
JCI Insight
Circumventing cellular immunity by miR142-mediated regulation sufficiently supports rAAV-delivered OVA expression without activating humoral immunity

Yuanyuan Xiao, Manish Muhuri, Shaoyong Li, Wanru Qin, Guangchao Xu, Li Luo, Jia Li, Alexander J. Letizia, Sean K. Wang, Ying Kai Chan, Chunmei Wang, Sebastian P. Fuchs, Dan Wang, Qin Su, M. Abu Nahid, George M. Church, Michael Farzan, Li Yang, Yuquan Wei, Ronald C. Desrosiers, Christian Mueller, Phillip W.L. Tai and Guangping Gao
September 10, 2020
Cell Chemical Biology
Eradicating Bacterial Persisters with Combinations of Strongly and Weakly Metabolism-Dependent Antibiotics

Erica J. Zheng, Jonathan M. Stokes, James J. Collins
September 11, 2020
Science Advances
Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing

Q. R. Xing, C. A. El Farran, P. Gautam, Y. S. Chuah, T. Warrier, C. X. D. Toh, N. Y. Kang, S. Sugii, Y. T. Chang, J. Xu, J. J. Collins, G. Q. Daley, H. Li, L. F. Zhang and Y. H. Loh
August 15, 2020
Sensors and Actuators A: Physical
Millimeter-sized piezoelectric flextensional actuators with improved mechanical efficiency

P. York, N. Jafferis, R. Wood