Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

Nature Reviews Microbiology
Definitions and guidelines for research on antibiotic persistence.

Nathalie Q. Balaban, Sophie Helaine, Kim Lewis, Martin Ackermann, Bree Aldridge, Dan I. Andersson, Mark P. Brynildsen, Dirk Bumann, Andrew Camilli, James J. Collins, Christoph Dehio, Sarah Fortune, Jean-Marc Ghigo, Wolf-Dietrich Hardt, Alexander Harms, Matthias Heinemann, Deborah T. Hung, Urs Jenal, Bruce R. Levin, Jan Michiels, Gisela Storz, Man-Wah Tan, Tanel Tenson, Laurence Van Melderen & Annelies Zinkernagel
Nature Microbiology
Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi

Henry H. Lee, Nili Ostrov, Brandon G. Wong, Michaela A. Gold, Ahmad S. Khalil & George M. Church
PNAS
Propagation of pop ups in kirigami shells.

Ahmad Rafsanjani, Lishuai Jin, Bolei Deng, and Katia Bertoldi
Nature Protocols
Microfabricated blood vessels for modeling the vascular transport barrier

William J. Polacheck, Matthew L. Kutys, Juliann B. Tefft & Christopher S. Chen
Molecular Cell
Beyond the Four Bases: A Home Run for Synthetic Epigenetic Control?

Timothy Z. Chang, James Kuo, Pamela A. Silver
PNAS
Daisy-chain gene drives for the alteration of local populations

Charleston Noble, John Min, Jason Olejarz, Joanna Buchthal, Alejandro Chavez, Andrea L. Smidler, Erika A. DeBenedictis, George M. Church, Martin A. Nowak, and Kevin M. Esvelt
PNAS
Digital logic for soft devices

Daniel J. Preston, Philipp Rothemund, Haihui Joy Jiang, Markus P. Nemitz, Jeff Rawson, Zhigang Suo, and George M. Whitesides
Advanced Materials
Biomaterials to Mimic and Heal Connective Tissues.

Benjamin R. Freedman, David J. Mooney
Microbiome
Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Annelies Geirnaert, Rachelle Prantil-Baun, Diogo M. Camacho, David B. Chou, Sasan Jalili-Firoozinezhad, Tomás de Wouters, Magdalena Kasendra, Michael Super, Mark J. Cartwright, Camilla A. Richmond, David T. Breault, Christophe Lacroix and Donald E. IngberEmail authorView ORCID ID profile
Nature
Particle robotics based on statistical mechanics of loosely coupled components

Shuguang Li, Richa Batra, David Brown, Hyun-Dong Chang, Nikhil Ranganathan, Chuck Hoberman, Daniela Rus & Hod Lipson
Nature
Diverse and robust molecular algorithms using reprogrammable DNA self-assembly

Damien Woods, David Doty, Cameron Myhrvold, Joy Hui, Felix Zhou, Peng Yin & Erik Winfree
JoVE
Cell-free Protein Expression Using the Rapidly Growing Bacterium Vibrio natriegens

Daniel J. Wiegand, Henry H. Lee, Nili Ostrov, George M. Church
Cell
Steroid Hormone Function Controls Non-competitive Plasmodium Development in Anopheles

Kristine Werling, W. Robert Shaw, Maurice A. Itoe, Kathleen A. Westervelt, Perrine Marcenac, Douglas G. Paton, Duo Peng, Naresh Singh, Andrea L. Smidler, Adam South, Amy A. Deik, Liliana Mancio-Silva, Allison R. Demas, Sandra March, Eric Calvo, Sangeeta N.Bhatia, Clary B. Clish, Flaminia Catteruccia
Nano Letters
124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics

Wade OK, Woehrstein JB, Nickels PC, Strauss S, Stehr F, Stein J, Schueder F, Strauss MT, Ganji M, Schnitzbauer J, Grabmayr H, Yin P, Schwille P, Jungmann R
Nature Methods
A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria

Jonathan M. Stokes, Arnaud Gutierrez, Allison J. Lopatkin, Ian W. Andrews, Shawn French, Ivan Matic, Eric D. Brown & James J. Collins
Genome Research
Accurate analysis of genuine CRISPR editing events with ampliCan

Labun K, Guo X, Chavez A, Church G, Gagnon JA, Valen E
PNAS
Renal reabsorption in 3D vascularized proximal tubule models

Neil Y. C. Lin, Kimberly A. Homan, Sanlin S. Robinson, David B. Kolesky, Nathan Duarte, Annie Moisan, and Jennifer A. Lewis
Genome Medicine
Predispositional genome sequencing in healthy adults: design, participant characteristics, and early outcomes of the PeopleSeq Consortium.

Emilie S. Zoltick, Michael D. Linderman, Molly A. McGinniss, Erica Ramos, Madeleine P. Ball, George M. Church, Debra G. B. Leonard, Stacey Pereira, Amy L. McGuire, C. Thomas Caskey, Saskia C. Sanderson, Eric E. Schadt, Daiva E. Nielsen, Scott D. Crawford, Robert C. Green and for the PeopleSeq Consortium
Journal of Molecular Biology
Electrostatic Steering Enables Flow-Activated von Willebrand Factor to Bind Platelet Glycoprotein, Revealed by Single-Molecule Stretching and Imaging

Jiang Y, Fu H, Springer TA, Wong WP
Nature Reviews Nephrology
Modelling diabetic vasculopathy with human vessel organoids

Ryuji Morizane