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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

March 6, 2026
Clinical Trials
Developing a platform protocol for clinical trials evaluating interventions that target proposed mechanisms of Long COVID: RECOVER-VITAL

Kanecia O Zimmerman, Richard Whitley, Sean O'Brien, David R Walt, Bruce D Levy, Christine Maughan, Marta Cerda, Rachel Olson, Lucinda Bateman, Cyndya A Shibao, Barry Make, David Knopman, Susan Redline, Leonard A Jason, Mehul S Suthar, Phillip Low, Tracy L Nolen, Craig Reist, Lisa Berdan, Lindsey R Baden
March 7, 2026
Advanced Science
Heuristically Adaptive Diffusion-Model Evolutionary Strategy

Benedikt Hartl, Yanbo Zhang, Hananel Hazan, Michael Levin
March 10, 2026
Communications Medicine
Antigen heterogeneity in the development and clinical validation of a multiplexed urine test for tuberculosis

Tyler J. Dougan, Shira Roth, Liangxia Xie, Sydney D’Amaddio & David R. Walt
January 27, 2026
Nature Reviews Materials
Delivering living medicines with biomaterials

Tetsuhiro Harimoto, Wei-Hung Jung, David Mooney
March 11, 2026
Nature Biomedical Engineering
DNA origami vaccine nanoparticles improve humoral and cellular immune responses to infectious diseases

Yang C. Zeng, Olivia J. Young, Qiancheng Xiong, Longlong Si, Min Wen Ku, Sylvie G. Bernier, Hawa Dembele, Giorgia Isinelli, Tal Gilboa, Zoe Swank, Su Hyun Seok, Anjali Rajwar, Amanda Jiang, Yunhao Zhai, LaTonya D. Williams, Caleb A. Hellman, Chris M. Wintersinger, Amanda R. Graveline, Andyna Vernet, Melinda Sanchez, Sarai Bardales, Georgia D. Tomaras, Ju Hee Ryu, Ick Chan Kwon, Girija Goyal, Donald E. Ingber & William M. Shih
March 11, 2026
Nature
Immune evasive DNA donors and recombinases license kilobase-scale writing

Connor J. Tou, Keqiang Xie, Joana Ferreira da Silva, Pazhanichamy Kalailingam, Eliz Amar-Lewis, David Rufino-Ramos, William Sawyer, Madeline L. Eller, Jakob Starzyk, Ishita Majumdar, Jiao Wang, Danna Lee, Shaobo Yang, Ronald J. Meis, Gary A. Dahl, Jiahe Li, Richard Shan, Natalie Artzi, Patricia L. Musolino, Hao Wu & Benjamin P. Kleinstiver
February 18, 2026
Cell Systems
Generative AI for synthetic biology: Designing biological parts, circuits, and genomes

Nayoung Kim, Giuliano De Carluccio, Kehan Zhang, James J Collins
February 19, 2026
Nature Communications
FATE-MAP predicts teratogenicity and human gastrulation failure modes by integrating deep learning and mechanistic modeling

Joseph Rufo, Chongxu Qiu, Dasol Han, Naomi Baxter, Gabrielle Daley, Jasmine Dhillon, Felix Wong, James J. Collins & Maxwell Z. Wilson
February 20, 2026
Advanced Science
Engineered Living Systems With Self-Organizing Neural Networks: From Anatomy to Behavior and Gene Expression

Haleh Fotowat, Laurie O'Neill, Léo Pio-Lopez, Megan M. Sperry, Patrick Erickson, Tiffany Lin, Michael Levin
February 21, 2026
Advanced Healthcare Materials
Kinetics of De Novo Bone and Bone Marrow Niche Formation With Hybrid Click Cryogels

Sangmin Lee, Kwasi Adu-Berchie, Azeem Sanjay Sharda, Tania To, Nikolaos Dimitrakakis, Alexander Stafford, Katherine Sheehan, Christopher Johnson, Hamza Ijaz, Phoebe Kwon, Mark J. Cartwright, Sandy Elmehrath, Mary Catherine Skolfield, Nicholas Jeffreys, Des White, Michael Williams, Michael Super, David T. Scadden, David J. Mooney
February 16, 2026
Scientific Reports
Candidate biomarkers to identify mesothelioma patients at risk of developing venous thromboembolism post-surgery

Adnan Shami-shah, Shira Roth, Shad R. Morton, Bogdan Budnik, William G. Richards, Raphael Bueno, Rushdy Ahmad & David R. Walt
February 5, 2026
Developmental Cell
Bmp9 regulates Notch signaling and the temporal dynamics of angiogenesis via Lunatic Fringe

Tommaso Ristori, Raphael Thuret, Erika Hooker, Peter Quicke, Sami Sanlidag, Kevin Lanthier, Kalonji Ntumba, Irene M Aspalter, Marina Uroz, Cecilia M Sahlgren, Shane P Herbert, Christopher S Chen, Bruno Larrivée, Katie Bentley
February 4, 2026
Clinical Infectious Diseases
Protracted SARS-CoV-2 Infection in B-cell Depleted Patients: Immunologic and Viral Characteristics and Response to Dual and Extended Antiviral Therapy

Jessica S Little , Gregory E Edelstein , Zoe Swank , Manish C Choudhary , Ella Borberg , Cameron T Nutt , Hayden S Andrews , Muneerah Aleissa , Urwah Kanwal , Katherine D Friedman , Anna Piermattei , Hannah Levine , Rinki Deo , Aidan Eustace , Xiaofang Li , Scott Dryden-Peterson , Lisa Cosimi , Pritha Sen , Meghan A Baker , Ann E Woolley , Jonathan Z Li , David R Walt , Nicolas C Issa , Lindsey R Baden , Amy C Sherman
February 20, 2026
iScience
CD4+ to CD8+ T cell imbalance drives poor Achilles tendon repair in patients

Franka Klatte-Schulz, Sven Geißler, Nicole Bormann, Susann Minkwitz, Serafim Tsitsilonis, Sebastian Manegold, Tobias Gehlen, Josephine A Melzer, Alper Kurtoglu, Aysha Bonell, Katharina Schmidt-Bleek, Georg N Duda, Birgit Sawitzki, Britt Wildemann
September 12, 2025
Bioelectricty
The Bioelectrics of Immortality and Mortality in Cold-Sensitive Hydra oligactis

Stefania E Kapsetaki, Angelina Pimkina, Patrick McMillen, Parande Tayyebi, Patrick Erickson, Michael Levin
February 4, 2026
Advanced Materials
High Concentration Antibody Formulations Enabled via Thermostable Ionic Liquids

Metecan Erdi, Anujan Ramesh, Vinny Chandran Suja, Shuyang Zhang, Samir Mitragotri, Bijay Singh
January 27, 2026
Nature Sustainability
A field‑deployable CRISPR-based biosensing platform for monitoring marine ecosystems

Nayoung Kim, Daniel S. Collins, Nina M. Donghia, Benjamin S. Miller, Hani M. Sallum, Silvi R. Lybbert, Elena Perini, James B. Niemi, James J. Collins & Peter Q. Nguyen
January 7, 2026
Nature
Nutrient requirements of organ-specific metastasis in breast cancer

Keene L. Abbott, Sonu Subudhi, Raphael Ferreira, Yetiş Gültekin, Sophie C. Steinbuch, Muhammad Bin Munim, Diya L. Ramesh, Sophie E. Honeder, Ashwin S. Kumar, Michelle Wu, Jacob A. Hansen, Anna Shevzov-Zebrun, Edrees H. Rashan, Kian M. Eghbalian, Sharanya Sivanand, Anna M. Barbeau, Lisa M. Riedmayr, Mark Duquette, Ahmed Ali, Nicole Henning, Sonia E. Trojan, Millenia Waite, Tenzin Kunchok, Mayu A. Nakano, Florian Gourgue, Gino B. Ferraro, Brian T. Do, Virginia Spanoudaki, Francisco J. Sánchez-Rivera, Xin Jin, George M. Church, Rakesh K. Jain & Matthew G. Vander Heiden
November 17, 2025
Blood Vessels, Thrombosis & Hemostasis
Distinct endothelial cell toxicities of Abl tyrosine kinase inhibitors lead to arterial thrombosis

Richard Travers, Alec Stepanian, Sebastiana Redford, Gregory Martin, Nicole L Svedberg, Kun Xu, Glenn Merrill-Skoloff, Christopher Chen, Robert Flaumenhaft, Iris Z Jaffe
November 14, 2025
Bioengineering & Translational Medicine
Three-dimensional modeling of flow through microvascular beds and surrounding interstitial spaces

Navaneeth Krishna Rajeeva Pandian, Alanna Farrell, Emily Davis, Subramanian Sundaram, Abraham Christoffel Ignatius van Steen, Jessica Li Chang Teo, Jeroen Eyckmans, Christopher S. Chen