Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

October 30, 2024
Nature
Temporal recording of mammalian development and precancer

Mirazul Islam, Yilin Yang, Alan J. Simmons, Vishal M. Shah, Krushna Pavan Musale, Yanwen Xu, Naila Tasneem, Zhengyi Chen, Linh T. Trinh, Paola Molina, Marisol A. Ramirez-Solano, Iannish D. Sadien, Jinzhuang Dou, Andrea Rolong, Ken Chen, Mark A. Magnuson, Jeffrey C. Rathmell, Ian G. Macara, Douglas J. Winton, Qi Liu, Hamim Zafar, Reza Kalhor, George M. Church, Martha J. Shrubsole, Robert J. Coffey & Ken S. Lau
November 6, 2024
Nature Computational Science
Deep generative design of RNA aptamers using structural predictions

Felix Wong, Dongchen He, Aarti Krishnan, Liang Hong, Alexander Z. Wang, Jiuming Wang, Zhihang Hu, Satotaka Omori, Alicia Li, Jiahua Rao, Qinze Yu, Wengong Jin, Tianqing Zhang, Katherine Ilia, Jack X. Chen, Shuangjia Zheng, Irwin King, Yu Li & James J. Collins
October 24, 2024
Nature Cell Biology
Differential stiffness between brain vasculature and parenchyma promotes metastatic infiltration through vessel co-option

Marina Uroz, Amy E. Stoddard, Bryan P. Sutherland, Olivia Courbot, Roger Oria, Linqing Li, Cara R. Ravasio, Mai T. Ngo, Jinling Yang, Juliann B. Tefft, Jeroen Eyckmans, Xue Han, Alberto Elosegui-Artola, Valerie M. Weaver & Christopher S. Chen
October 28, 2024
PNAS
Tuning porosity of macroporous hydrogels enables rapid rates of stress relaxation and promotes cell expansion and migration

Bryan A Nerger, Kirti Kashyap, Brendan T Deveney, Junzhe Lou, Blake F Hanan, Qi Liu, Andrew Khalil, Tenzin Lungjangwa, Maria Cheriyan, Anupam Gupta, Rudolf Jaenisch, David A Weitz, L Mahadevan, David J Mooney
October 29, 2024
Advanced Materials
Digital Light Process 3D Printing of Magnetically Aligned Liquid Crystalline Elastomer Free-forms

Jeremy A. Herman, Rodrigo Telles, Caitlyn C. Cook, Samuel C. Leguizamon, Jennifer A. Lewis, Bryan Kaehr, Timothy J. White, Devin J. Roach
October 28, 2024
RSC Advances
Intact quantitation and evaluation of a PEG-glycosulfopeptide as a therapeutic P-selectin antagonist

Diane D Park, Simon S Park, Erbin Dai, Carolyn A Haller, Daniel J Wong, Walter J Wever, Richard D Cummings, Elliot L Chaikof
October 30, 2024
PNAS
Measurement of α-synuclein as protein cargo in plasma extracellular vesicles

Tal Gilboa, Dmitry Ter-Ovanesyan, Shih-Chin Wang, Sara Whiteman, George T. Kannarkat, George M. Church, Alice S. Chen-Plotkin, and David R. Walt
October 29, 2024
Applied and Environmental Microbiology
Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth

Max G. Schubert, Tzu-Chieh Tang, Isabella M. Goodchild-Michelman, Krista A. Ryon, James R. Henriksen, Theodore Chavkin, Yanqi Wu, Teemu P. Miettinen, Stefanie Van Wychen, Lukas R. Dahlin, Davide Spatafora, Gabriele Turco, Michael T. Guarnieri, Scott R. Manalis, John Kowitz, Elizabeth C. Hann, Raja Dhir, Paola Quatrini, Christopher E. Mason, George M. Church, Marco Milazzo, Braden T. Tierney
October 25, 2024
Journal of Controlled Release
An ionic liquid-based adjuvant for modulating cellular and humoral immune responses

Morgan J Goetz, Kyung Soo Park, Maithili Joshi, Alexander P Gottlieb, David J Dowling, Samir Mitragotri
October 24, 2024
Journal of Controlled Release
Choline geranate (CAGE): A multifaceted ionic liquid for drug delivery

Samir Mitragotri
May 6, 2024
Nature Biomedical Engineering
Durable lymph-node expansion is associated with the efficacy of therapeutic vaccination

Alexander J. Najibi, Ryan S. Lane, Miguel C. Sobral, Giovanni Bovone, Shawn Kang, Benjamin R. Freedman, Joel Gutierrez Estupinan, Alberto Elosegui-Artola, Christina M. Tringides, Maxence O. Dellacherie, Katherine Williams, Hamza Ijaz, Sören Müller, Shannon J. Turley & David J. Mooney
October 17, 2024
npj Regenerative Medicine
A latent Axin2+/Scx+ progenitor pool is the central organizer of tendon healing

Mor Grinstein, Stephanie L. Tsai, Daniel Montoro, Benjamin R. Freedman, Heather L. Dingwall, Steffany Villaseñor, Ken Zou, Moshe Sade-Feldman, Miho J. Tanaka, David J. Mooney, Terence D. Capellini, Jayaraj Rajagopal & Jenna L. Galloway
October 18, 2024
ACS Nano
A Multiplexed Digital Platform Enables Detection of Attomolar Protein Levels with Minimal Cross-Reactivity

Stephanie J. Zhang, Connie Wu, David R. Walt
October 10, 2024
PNAS
Dramatic droplet deformation through interfacial particles jamming

Luoran Shang, Ke Xu, Peter J Lu, Alireza Abbaspourrad, Yuanjin Zhao, David A Weitz
October 9, 2024
Applied Ergonomics
Active back exosuits demonstrate positive usability perceptions that drive intention-to-use in the field among logistic warehouse workers

Adam Hess, Jesse V Jacobs, Sarah Sullivan, Dionna O Roberts Williams, Lou N Awad, Diane Dalton, Conor J Walsh, D Adam Quirk
September 27, 2024
Clinical Microbiology and Infection
Measurement of circulating viral antigens post-SARS-CoV-2 infection in a multicohort study

Zoe Swank, Ella Borberg, Yulu Chen, Yasmeen Senussi, Sujata Chalise, Zachary Manickas-Hill, Xu G Yu, Jonathan Z Li, Galit Alter, Timothy J Henrich, J Daniel Kelly, Rebecca Hoh, Sarah A Goldberg, Steven G Deeks, Jeffrey N Martin, Michael J Peluso, Aarthi Talla, Xiaojun Li, Peter Skene, Thomas F Bumol, Troy R Torgerson, Julie L Czartoski, M Juliana McElrath, Elizabeth W Karlson, David R Walt; RECOVER consortium authors
October 11, 2024
Nature Methods
Single-shot 20-fold expansion microscopy

Shiwei Wang, Tay Won Shin, Harley B. Yoder II, Ryan B. McMillan, Hanquan Su, Yixi Liu, Chi Zhang, Kylie S. Leung, Peng Yin, Laura L. Kiessling & Edward S. Boyden
October 18, 2024
iScience
Exploring immune response toward transplanted human kidney tissues assembled from organoid building blocks

Thiago J Borges, Yoshikazu Ganchiku, Jeffrey O Aceves, Ronald van Gaal, Sebastien G M Uzel, Ivy A Rosales, Jonathan E Rubins, Kenichi Kobayashi, Ken Hiratsuka, Murat Tekguc, Guilherme T Ribas, Karina Lima, Rodrigo B Gassen, Ryuji Morizane, Jennifer A Lewis, Leonardo V Riella
October 15, 2024
Trials
UROPOT: study protocol for a randomized, double-blind phase I/II trial for metabolism-based potentiation of antimicrobial prophylaxis in the urological tract

Kevin Stritt, Beat Roth, Audrey Masnada, Felix Hammann, Damien Jacot, Sonia Domingos-Pereira, François Crettenand, Perrine Bohner, Isabelle Sommer, Emilien Bréat, Julien Sauser, Laurent Derré, Manuel Haschke, James J. Collins, John McKinney & Sylvain Meylan
October 18, 2024
Science Advances
Hypertrophic cardiomyopathy–associated mutations drive stromal activation via EGFR-mediated paracrine signaling

Jourdan K Ewoldt, Miranda C Wang, Micheal A McLellan, Paige E Cloonan, Anant Chopra, Joshua Gorham, Linqing Li Daniel M DeLaughter, Xining Gao, Joshua H Lee, Jon A L Willcox, Olivia Layton, Rebeccah J Luu, Christopher N Toepfer, Jeroen Eyckmans, Christine E Seidman, Jonathan G Seidman, Christopher S Chen