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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

December 20, 2024
ACS Applied Materials & Interfaces
Syringable Microcapsules for Sustained, Localized, and Controllable siRNA Delivery

Yan Liu, Yang Wang, Rajesh A. Kulkarni, Lindsay Anne Wegiel, Byungkook Lee, Sean K. Bedingfield, David Weitz
December 25, 2024
Advanced Healthcare Materials
Integrating Hydrogels and Biomedical Plastics via In Situ Physical Entanglements and Covalent Bonding

Zhenwei Ma, Favour O. Obuseh, Benjamin R. Freedman, Junsoo Kim, Matthew Torre, David J. Mooney
December 26, 2024
Trends in Cell Biology
Modulating cell-free DNA biology as the next frontier in liquid biopsies

Shervin Tabrizi, Carmen Martin-Alonso, Kan Xiong, Sangeeta N Bhatia, Viktor A Adalsteinsson, J Christopher Love
December 30, 2024
Nature Communications
SARS-CoV-2 infection of human pluripotent stem cell-derived vascular cells reveals smooth muscle cells as key mediators of vascular pathology during infection

Alexsia Richards, Andrew S. Khalil, Max Friesen, Troy W. Whitfield, Xinlei Gao, Tenzin Lungjangwa, Roger D. Kamm, Zhengpeng Wan, Lee Gehrke, David Mooney & Rudolf Jaenisch
December 31, 2024
npj Systems Biology and Applications
Open problems in synthetic multicellularity

Ricard Solé, Núria Conde–Pueyo, Jordi Pla–Mauri, Jordi Garcia–Ojalvo, Nuria Montserrat & Michael Levin
November 29, 2024
Cells
Herpes Simplex Virus 1 Infection of Human Brain Organoids and Pancreatic Stem Cell-Islets Drives Organoid-Specific Transcripts Associated with Alzheimer’s Disease and Autoimmune Diseases

Jonathan Sundstrom, Emma Vanderleeden, Nathaniel J Barton, Sambra D Redick, Pepper Dawes, Liam F Murray, Meagan N Olson, Khanh Tran, Samantha M Chigas, Adrian R Orszulak, George M Church, Benjamin Readhead, Hyung Suk Oh, David M Harlan, David M Knipe, Jennifer P Wang, Yingleong Chan, Elaine T Lim
December 9, 2024
Small Methods
Cargo Quantification of Functionalized DNA Origami for Therapeutic Application

Olivia J. Young, Hawa Dembele, Anjali Rajwar, Ick Chan Kwon, Ju Hee Ryu, William M. Shih, Yang C. Zeng
December 9, 2024
Nature Biotechnology
Ovarian tumor cells gain competitive advantage by actively reducing the cellular fitness of microenvironment cells

Esha Madan, António M. Palma, Vignesh Vudatha, Amit Kumar, Praveen Bhoopathi, Jochen Wilhelm, Tytus Bernas, Patrick C. Martin, Gaurav Bilolikar, Aenya Gogna, Maria Leonor Peixoto, Isabelle Dreier, Thais Fenz Araujo, Elena Garre, Anna Gustafsson, Kalpana Deepa Priya Dorayappan, Narsimha Mamidi, Zhaoyu Sun, Michail Yekelchyk, Davide Accardi, Amalie Lykke Olsen, Lin Lin, Asaf Ashkenazy Titelman, Michael Bianchi, Phil Jessmon, Elnaz Abbasi Farid, Anjan K. Pradhan, Lena Neufeld, Eilam Yeini, Santanu Maji, Christopher J. Pelham, Hyobin Kim, Daniel Oh, Hans Olav Rolfsnes, Rita C. Marques, Amy Lu, Masaki Nagane, Sahil Chaudhary, Kartik Gupta, Keshav C. Gogna, Ana Bigio, Karthikeya Bhoopathi, Padmanabhan Mannangatti, K. Gopinath Achary, Javed Akhtar, Sara Belião, Swadesh Das, Isabel Correia, Cláudia L. da Silva, Arsénio M. Fialho, Michael J. Poellmann, Kaila Javius-Jones, Adam M. Hawkridge, Sanya Pal, Kumari S. Shree, Emad A. Rakha, Sambhav Khurana, Gaoping Xiao, Dongyu Zhang, Arjun Rijal, Charles Lyons, Steven R. Grossman, David P. Turner, Raghavendra Pillappa, Karanvir Prakash, Gaurav Gupta, Gary L. W. G. Robinson, Jennifer Koblinski, Hongjun Wang, Gita Singh, Sujay Singh, Sagar Rayamajhi, Manny D. Bacolod, Hope Richards, Sadia Sayeed, Katherine P. Klein, David Chelmow, Ronit Satchi-Fainaro, Karuppaiyah Selvendiran, Denise Connolly, Frits Alan Thorsen, Rolf Bjerkvig, Kenneth P. Nephew, Michael O. Idowu, Mark P. Kühnel, Christopher Moskaluk, Seungpyo Hong, William L. Redmond, Göran Landberg, Antonio Lopez-Beltran, Andrew S. Poklepovic, Arun Sanyal, Paul B. Fisher, George M. Church, Usha Menon, Ronny Drapkin, Andrew K. Godwin, Yonglun Luo, Maximilian Ackermann, Alexandar Tzankov, Kirsten D. Mertz, Danny Jonigk, Allan Tsung, David Sidransky, Jose Trevino, Arturo P. Saavedra, Robert Winn, Kyoung Jae Won, Eduardo Moreno & Rajan Gogna
December 9, 2024
Nature Protocols
An explainable deep learning platform for molecular discovery

Felix Wong, Satotaka Omori, Alicia Li, Aarti Krishnan, Ryan S. Lach, Joseph Rufo, Maxwell Z. Wilson & James J. Collins
December 11, 2024
Nature
Sacrificial capillary pumps to engineer multiscalar biological forms

Subramanian Sundaram, Joshua H. Lee, Isabel M. Bjørge, Christos Michas, Sudong Kim, Alex Lammers, João F. Mano, Jeroen Eyckmans, Alice E. White & Christopher S. Chen
December 2, 2024
Bioessays
The Multiscale Wisdom of the Body: Collective Intelligence as a Tractable Interface for Next-Generation Biomedicine

Michael Levin
November 22, 2024
Journal of Controlled Release
Backpack-carrying macrophage immunotherapy for periodontitis

Mayuka Nakajima, Neha Kapate, John R Clegg, Mayumi Ikeda-Imafuku, Kyung Soo Park, Ninad Kumbhojkar, Vinny Chandran Suja, Supriya Prakash, Lily Li-Wen Wang, Koichi Tabeta, Samir Mitragotri
November 21, 2024
Nature Methods
Accurate RNA 3D structure prediction using a language model-based deep learning approach

Tao Shen, Zhihang Hu, Siqi Sun, Di Liu, Felix Wong, Jiuming Wang, Jiayang Chen, Yixuan Wang, Liang Hong, Jin Xiao, Liangzhen Zheng, Tejas Krishnamoorthi, Irwin King, Sheng Wang, Peng Yin, James J. Collins & Yu Li
May 4, 2024
Bioengineering & Translational Medicine
Antibody drug conjugates in the clinic

Edidiong Udofa, Disha Sankholkar, Samir Mitragotri, Zongmin Zhao
May 16, 2024
Bioengineering & Translational Medicine
Hydrogels in the clinic: An update

John R. Clegg, Kolade Adebowale, Zongmin Zhao, Samir Mitragotri
May 1, 2024
Bioengineering & Translational Medicine
Hemostats in the clinic

Maithili Joshi, Zongmin Zhao, Samir Mitragotri
October 2, 2024
Matter
Stiff Hydrogel Encapsulation Retains Mesenchymal Stem Cell Stemness for Regenerative Medicine

Bo Li, Liyuan Zhang, Yuan Yin, Anqi Chen, Bo Ri Seo, Junzhe Lou, David J Mooney, David A Weitz
November 18, 2024
PNAS
IL-2/anti-IL-2 antibody complexes augment immune responses to therapeutic cancer vaccines

Miguel C. Sobral, Laura Cabizzosu, Shawn J. Kang, Kyle Ruark, Alex J. Najibi, Ryan S. Lane, Einat Vitner, Hamza Ijaz, Maxence O. Dellacherie, Mason T. Dacus, Christina M. Tringides, Irene de Lázaro, Mikaël J. Pittet, Sören Müller, Shannon J. Turley, and David J. Mooney
November 18, 2024
Advanced Science
Matrix Architecture and Mechanics Regulate Myofibril Organization, Costamere Assembly, and Contractility in Engineered Myocardial Microtissues

Samuel J. DePalma, Javiera Jilberto, Austin E. Stis, Darcy D. Huang, Jason Lo, Christopher D. Davidson, Aamilah Chowdhury, Robert N. Kent III, Maggie E. Jewett, Hiba Kobeissi, Christopher S. Chen, Emma Lejeune, Adam S. Helms, David A. Nordsletten, Brendon M. Baker
November 11, 2024
Scientific Reports
Multicellular adaptation to electrophysiological perturbations analyzed by deterministic and stochastic bioelectrical models

Javier Cervera, Michael Levin & Salvador Mafe