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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

September 3, 2022
Biosystems
Competition for finite resources as coordination mechanism for morphogenesis: An evolutionary algorithm study of digital embryogeny

Peter Smiley, Michael Levin
September 6, 2022
Molecular Systems Biology
Benchmarking AlphaFold-enabled molecular docking predictions for antibiotic discovery

Felix Wong, Aarti Krishnan, Erica J Zheng, Hannes Stärk, Abigail L Manson, Ashlee M Earl, Tommi Jaakkola, James J Collins
September 7, 2022
Science Translational Medicine
Advances toward transformative therapies for tendon diseases

Benjamin R Freedman, David J Mooney, Eckhard Weber
August 24, 2022
Clinical Infectious Diseases
Severe Acute Respiratory Syndrome Coronavirus 2 Messenger RNA Vaccines in Allogeneic Hematopoietic Stem Cell Transplant Recipients: Immunogenicity and Reactogenicity

Amy C Sherman, Michaël Desjardins, Chi An Cheng, Bruce Bausk, Natalie Izaguirre, Guohai Zhou, Jonathan Krauss, Nicole Tolan, David R Walt, Robert Soiffer, Vincent T Ho, Nicolas C Issa, Lindsey R Baden
August 27, 2022
Advanced Materials
Sprayable hydrogel for instant sealing of vascular anastomosis

Gonzalo Muñoz Taboada, Pere Dosta, Elazer R. Edelman, Natalie Artzi
August 30, 2022
Blood
Conformation of von Willebrand factor in shear flow revealed with stroboscopic single-molecule imaging

Hans T. Bergal, Yan Jiang, Darren Yang, Timothy A. Springer, Wesley P. Wong
August 16, 2022
Open Forum Infectious Diseases
Immunogenicity of a Three-Dose Primary Series of mRNA COVID-19 Vaccines in Patients With Lymphoid Malignancies

Amy C Sherman, Jennifer L Crombie, ChiAn Cheng, Michaël Desjardins, Guohai Zhou, Omolola Ometoruwa, Rebecca Rooks, Yasmeen Senussi, Mikaela McDonough, Liliana I Guerrero, John Kupelian, Simon Doss-Gollin, Kinga K Smolen, Simon D van Haren, Philippe Armand, Ofer Levy, David R Walt, Lindsey R Baden, Nicolas C Issa
August 29, 2022
Nature Biomedical Engineering
Revealing nanostructures in brain tissue via protein decrowding by iterative expansion microscopy

Deblina Sarkar, Jinyoung Kang, Asmamaw T. Wassie, Margaret E. Schroeder, Zhuyu Peng, Tyler B. Tarr, Ai-Hui Tang, Emily D. Niederst, Jennie Z. Young, Hanquan Su, Demian Park, Peng Yin, Li-Huei Tsai, Thomas A. Blanpied & Edward S. Boyden
August 24, 2022
Nature Materials
Soft materials evolution and revolution

David A. Weitz
August 12, 2022
Communications Biology
PIKfyve-specific inhibitors restrict replication of multiple coronaviruses in vitro but not in a murine model of COVID-19

James Logue, Arup R. Chakraborty, Robert Johnson, Girija Goyal, Melissa Rodas, Louis J. Taylor, Lauren Baracco, Marisa E. McGrath, Robert Haupt, Brooke A. Furlong, Mercy Soong, Pranav Prabhala, Viktor Horvath, Kenneth E. Carlson, Stuart Weston, Donald E. Ingber, Melvin L. DePamphilis & Matthew B. Frieman
August 15, 2022
The American Journal of Tropical Medicine and Hygiene
An Assessment of a Rapid SARS-CoV-2 Antigen Test in Bangladesh

Zannat Kawser, Mohabbat Hossain, Sara Suliman, Shahin Lockman, Jesse Gitaka, Gama Bandawe, Redwan Rahmat, Imrul Hasan, Abu Bakar Siddik, Mokibul Hassan Afrad, Mohammed Ziaur Rahman, Glenn Miller, David R Walt, Louise C Ivers, Regina C LaRocque, Jason B Harris, Firdausi Qadri
August 10, 2022
Molecular Cell
Reactive metabolic byproducts contribute to antibiotic lethality under anaerobic conditions

Felix Wong, Jonathan M Stokes, Sarah C Bening, Charles Vidoudez, Sunia A Trauger, James J Collins
August 5, 2022
Chemical Reviews
Self-Healing Injectable Hydrogels for Tissue Regeneration

Pascal Bertsch, Mani Diba, David J. Mooney, and Sander C. G. Leeuwenburgh
July 31, 2022
Biomaterials
Murine macrophages or their secretome delivered in alginate dressings enhance impaired wound healing in diabetic mice

Georgios Theocharidis, Sahar Rahmani, Sangmin Lee, Zhuqing Li, Antonio Lobao, Konstantinos Kounas, Xanthi-Lida Katopodi, Peng Wang, Salina Moon, Ioannis S Vlachos, Monika Niewczas, David Mooney, Aristidis Veves
August 4, 2022
Cell Reports Methods
Direct capture of neutralized RBD enables rapid point-of-care assessment of SARS-CoV-2 neutralizing antibody titer

Guinevere G Connelly, Orville O Kirkland, Seven Bohannon, Daniel C Lim, Robert M Wilson, Edward J Richards, Dousabel M Tay, Hyuk Jee, Riley D Hellinger, Ngoc K Hoang, Liang Hao, Arnav Chhabra, Carmen Martin-Alonso, Edward K W Tan, Angela N Koehler, Michael B Yaffe, Wendy B London, Pui Y Lee, Florian Krammer, Robert C Bohannon, Sangeeta N Bhatia, Hadley D Sikes, Hojun Li
August 8, 2022
Nature Biomedical Engineering
A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma

Devora Najjar, Joshua Rainbow, Sanjay Sharma Timilsina, Pawan Jolly, Helena de Puig, Mohamed Yafia, Nolan Durr, Hani Sallum, Galit Alter, Jonathan Z. Li, Xu G. Yu, David R. Walt, Joseph A. Paradiso, Pedro Estrela, James J. Collins & Donald E. Ingber
August 4, 2022
Nature Nanotechnology
Nanozyme-catalysed CRISPR assay for preamplification-free detection of non-coding RNAs

Marta Broto, Michael M. Kaminski, Christopher Adrianus, Nayoung Kim, Robert Greensmith, Schan Dissanayake-Perera, Alexander J. Schubert, Xiao Tan, Hyemin Kim, Anand S. Dighe, James J. Collins & Molly M. Stevens
July 22, 2022
Nature Reviews Materials
End-to-end design of wearable sensors

H. Ceren Ates, Peter Q. Nguyen, Laura Gonzalez-Macia, Eden Morales-Narváez, Firat Güder, James J. Collins & Can Dincer
August 2, 2022
Nature Communications
Multiplex base editing to convert TAG into TAA codons in the human genome

Yuting Chen, Eriona Hysolli, Anlu Chen, Stephen Casper, Songlei Liu, Kevin Yang, Chenli Liu & George Church
July 19, 2022
Physiology
What Can an Organ-on-a-Chip Teach Us About Human Lung Pathophysiology?

Haiqing Bai, Donald E Ingber