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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

May 2, 2022
Nature Methods
Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly

Di Liu, François A. Thélot, Joseph A. Piccirilli, Maofu Liao & Peng Yin
May 10, 2022
Langmuir
Nanoparticle Properties Influence Transendothelial Migration of Monocytes

Nahal Habibi, Tyler D. Brown, Kwasi Adu-Berchie, Stephanie Christau, Jeffery E. Raymond, David J. Mooney, Samir Mitragotri, and Joerg Lahann
May 5, 2022
Cell Stem Cell
Biomanufacturing human tissues via organ building blocks

Kayla J. Wolf, Jonathan D. Weiss, Sebastien G.M. Uzel, Mark A. Skylar-Scott, Jennifer A. Lewis
May 7, 2022
Cancer Immunology, Immunotherapy
Targeting tumor extracellular matrix activates the tumor-draining lymph nodes

Alexander J. Najibi, Ting-Yu Shih, David K. Y. Zhang, Junzhe Lou, Miguel C. Sobral, Hua Wang, Maxence O. Dellacherie, Kwasi Adu-Berchie & David J. Mooney
May 7, 2022
Biophysical Journal
Single-molecule studies reveal method for tuning the heterogeneous activity of Alkaline Phosphatase

Tal Gilboa, Alana F. Ogata, Charles Reilly, David R. Walt
May 9, 2022
Nature Communications
Modulating the evolutionary trajectory of tolerance using antibiotics with different metabolic dependencies

Erica J. Zheng, Ian W. Andrews, Alexandra T. Grote, Abigail L. Manson, Miguel A. Alcantar, Ashlee M. Earl & James J. Collins
April 12, 2022
Lab on a Chip
Establishment of physiologically relevant oxygen gradients in microfluidic organ chips

Jennifer Grant, Elizabeth Lee, Micaela Almeida, Seongmin Kim, Nina LoGrande, Girija Goyal, Adama Marie Sesay, David T Breault, Rachelle Prantil-Baun, Donald E Ingber
April 19, 2022
Lab on a Chip
Actuated 3D microgels for single cell mechanobiology

Berna Özkale, Junzhe Lou, Ece Özelçi, Alberto Elosegui-Artola, Christina M Tringides, Angelo S Mao, Mahmut Selman Sakar, David J Mooney
April 19, 2022
Nature Communications
A single-cell nanocoating of probiotics for enhanced amelioration of antibiotic-associated diarrhea

Jiezhou Pan, Guidong Gong, Qin Wang, Jiaojiao Shang, Yunxiang He, Chelsea Catania, Dan Birnbaum, Yifei Li, Zhijun Jia, Yaoyao Zhang, Neel S. Joshi & Junling Guo
April 20, 2022
Tissue Engineering Part C Methods
Viscoelastic Biomaterials for Tissue Regeneration

Dr. David Tiansui Wu, Mr. Nicholas Jeffreys, Dr. Mani Diba, and Dr. David J. Mooney
April 19, 2022
Cell Host & Microbe
A single-cell liver atlas of Plasmodium vivax infection

Liliana Mancio-Silva, Nil Gural, Eliana Real, Marc H Wadsworth 2nd, Vincent L Butty, Sandra March, Niketa Nerurkar, Travis K Hughes, Wanlapa Roobsoong, Heather E Fleming, Charlie A Whittaker, Stuart S Levine, Jetsumon Sattabongkot, Alex K Shalek, Sangeeta N Bhatia
March 24, 2022
Frontiers in Systems Neuroscience
Technological Approach to Mind Everywhere: An Experimentally-Grounded Framework for Understanding Diverse Bodies and Minds

Michael Levin
April 12, 2022
Nature Cell Biology
CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development

Edroaldo Lummertz da Rocha, Caroline Kubaczka, Wade W. Sugden, Mohamad Ali Najia, Ran Jing, Arianna Markel, Zachary C. LeBlanc, Rafael dos Santos Peixoto, Marcelo Falchetti, James J. Collins, Trista E. North & George Q. Daley
April 11, 2022
Nature Biomedical Engineering
An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis

Andrés Cubillos-Ruiz, Miguel A. Alcantar, Nina M. Donghia, Pablo Cárdenas, Julian Avila-Pacheco & James J. Collins
April 8, 2022
Nature Communications
Mechanical control of innate immune responses against viral infection revealed in a human lung alveolus chip

Haiqing Bai, Longlong Si, Amanda Jiang, Chaitra Belgur, Yunhao Zhai, Roberto Plebani, Crystal Yuri Oh, Melissa Rodas, Aditya Patil, Atiq Nurani, Sarah E. Gilpin, Rani K. Powers, Girija Goyal, Rachelle Prantil-Baun & Donald E. Ingber
April 1, 2022
Methods in Molecular Biology
Studying Protista WBR and Repair Using Physarum polycephalum

Megan M. Sperry, Nirosha J. Murugan, Michael Levin
April 5, 2022
ACS Synthetic Biology
DNA Input Classification by a Riboregulator-Based Cell-Free Perceptron

Ardjan J. van der Linden, Pascal A. Pieters, Mart W. Bartelds, Bryan L. Nathalia, Peng Yin, Wilhelm T. S. Huck, Jongmin Kim, and Tom F. A. de Greef
March 15, 2022
Cancers
Ion Channel Drugs Suppress Cancer Phenotype in NG108-15 and U87 Cells: Toward Novel Electroceuticals for Glioblastoma

Juanita Mathews, Franz Kuchling, David Baez-Nieto, Miranda Diberardinis, Jen Q Pan, Michael Levin
March 24, 2022
Nature Biomedical Engineering
Orthogonally induced differentiation of stem cells for the programmatic patterning of vascularized organoids and bioprinted tissues

Mark A. Skylar-Scott, Jeremy Y. Huang, Aric Lu, Alex H. M. Ng, Tomoya Duenki, Songlei Liu, Lucy L. Nam, Sarita Damaraju, George M. Church & Jennifer A. Lewis
March 22, 2022
Journal of Controlled Release
Strategies to improve the EPR effect: A mechanistic perspective and clinical translation

Mayumi Ikeda-Imafuku, Lily Li-Wen Wang, Danika Rodrigues, Suyog Shaha, Zongmin Zhao, Samir Mitragotri