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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

October 10, 2022
Nature Methods
Light-Seq: light-directed in situ barcoding of biomolecules in fixed cells and tissues for spatially indexed sequencing

Jocelyn Y. Kishi, Ninning Liu, Emma R. West, Kuanwei Sheng, Jack J. Jordanides, Matthew Serrata, Constance L. Cepko, Sinem K. Saka & Peng Yin
September 13, 2022
Molecular Therapy Nucleic Acids
Self-assembling short immunostimulatory duplex RNAs with broad-spectrum antiviral activity Author links open overlay panel

Longlong Si, Haiqing Bai, Crystal Yuri Oh, Amanda Jiang, Fan Hong, Tian Zhang, Yongxin Ye, Tristan X.Jordan, James Logue, Marisa McGrath, Chaitra Belgur, Karina Calderon, Atiq Nurani, Wuji Cao, Kenneth E. Carlson, Rachelle Prantil-Baun, Steven P. Gygi, Dong Yang, Colleen B. Jonsson, Benjamin R. tenOever,, Matthew Frieman, Donald E. Ingber
September 29, 2022
British Journal of Cancer
Concurrent inhibition of CDK2 adds to the anti-tumour activity of CDK4/6 inhibition in GIST

Inga-Marie Schaefer, Matthew L. Hemming, Meijun Z. Lundberg, Matthew P. Serrata, Isabel Goldaracena, Ninning Liu, Peng Yin, Joao A. Paulo, Steven P. Gygi, Suzanne George, Jeffrey A. Morgan, Monica M. Bertagnolli, Ewa T. Sicinska, Chen Chu, Shanshan Zheng, Adrian Mariño-Enríquez, Jason L. Hornick, Chandrajit P. Raut, Wen-Bin Ou, George D. Demetri, Sinem K. Saka & Jonathan A. Fletcher
September 30, 2022
Annals of the New York Academy of Sciences
Engineering multicellular living systems-A Keystone Symposia report

Jennifer Cable, Paola Arlotta, Kevin Kit Parker, Alex J Hughes, Katharine Goodwin, Christine L Mummery, Roger D Kamm, Sandra J Engle, Danilo A Tagle, Sylvia F Boj, Alice E Stanton, Yoshihiro Morishita, Melissa L Kemp, Dennis A Norfleet, Elebeoba E May, Aric Lu, Rashid Bashir, Adam W Feinberg, Sarah M Hull, Anjelica L Gonzalez, Michael R Blatchley, Núria Montserrat Pulido, Ryuji Morizane, Todd C McDevitt, Deepak Mishra, Adriana Mulero-Russe
September 27, 2022
Advanced Drug Delivery Reviews
Modeling mucus physiology and pathophysiology in human organs-on-chips

Zohreh Izadifar, Alexandra Sontheimer-Phelps, Bob A Lubamba, Haiqing Bai, Cicely Fadel, Anna Stejskalova, Alican Ozkan, Queeny Dasgupta, Amir Bein, Abidemi Junaid, Aakanksha Gulati, Gautam Mahajan, Seongmin Kim, Nina T LoGrande, Arash Naziripour, Donald E Ingber
October 3, 2022
Nature Communications
Multiscale profiling of protease activity in cancer

Ava P. Amini, Jesse D. Kirkpatrick, Cathy S. Wang, Alex M. Jaeger, Susan Su, Santiago Naranjo, Qian Zhong, Christina M. Cabana, Tyler Jacks & Sangeeta N. Bhatia
September 21, 2022
Science Advances
Organoid-on-a-chip model of human ARPKD reveals mechanosensing pathomechanisms for drug discovery

Ken Hiratsuka, Tomoya Miyoshi, Katharina T Kroll, Navin R Gupta, M Todd Valerius, Thomas Ferrante, Michifumi Yamashita, Jennifer A Lewis, Ryuji Morizane
July 7, 2022
Advanced Materials
Rapid Ultratough Topological Tissue Adhesives

Juan A. Cintron-Cruz, Benjamin R. Freedman,Matthew Lee,Christopher Johnson,Hamza Ijaz, David J. Mooney
August 30, 2022
Biophysical Journal
Three-phase DNA-Origami Stepper Mechanism Based on Multi-Leg Interactions

Luzia Kilwing, Pascal Lill, Bhavik Nathwani, Jasleen Kaur Daljit Singh, Tim Liedl, William M Shih
September 2, 2022
Clinical Infectious Diseases
Persistent circulating SARS-CoV-2 spike is associated with post-acute COVID-19 sequelae

Zoe Swank, Yasmeen Senussi, Zachary Manickas-Hill, Xu G Yu, Jonathan Z Li, Galit Alter, David R Walt
September 2, 2022
Heart and Circulatory Physiology
Mechanical response of cardiac microtissues to acute localized injury

Shoshana L. Das, Bryan P. Sutherland, Emma Lejeune, Jeroen Eyckmans, and Christopher S. Chen
August 23, 2022
Cell
helixCAM: A platform for programmable cellular assembly in bacteria and human cells

George Chao, Timothy M Wannier, Clair Gutierrez, Nathaniel C Borders, Evan Appleton, Anjali Chadha, Tina Lebar, George M Chur
September 2, 2022
Scientific Reports
3D proximal tubule-on-chip model derived from kidney organoids with improved drug uptake

Jeffrey O. Aceves, Szilvia Heja, Kenichi Kobayashi, Sanlin S. Robinson, Tomoya Miyoshi, Takuya Matsumoto, Olivier J. M. Schäffers, Ryuji Morizane & Jennifer A. Lewis
September 2, 2022
Nature Nanotechnology
Detection of modified RNA with an engineered nanopore

Sukanya Punthambaker
September 3, 2022
Biosystems
Competition for finite resources as coordination mechanism for morphogenesis: An evolutionary algorithm study of digital embryogeny

Peter Smiley, Michael Levin
September 6, 2022
Molecular Systems Biology
Benchmarking AlphaFold-enabled molecular docking predictions for antibiotic discovery

Felix Wong, Aarti Krishnan, Erica J Zheng, Hannes Stärk, Abigail L Manson, Ashlee M Earl, Tommi Jaakkola, James J Collins
September 7, 2022
Science Translational Medicine
Advances toward transformative therapies for tendon diseases

Benjamin R Freedman, David J Mooney, Eckhard Weber
August 24, 2022
Clinical Infectious Diseases
Severe Acute Respiratory Syndrome Coronavirus 2 Messenger RNA Vaccines in Allogeneic Hematopoietic Stem Cell Transplant Recipients: Immunogenicity and Reactogenicity

Amy C Sherman, Michaël Desjardins, Chi An Cheng, Bruce Bausk, Natalie Izaguirre, Guohai Zhou, Jonathan Krauss, Nicole Tolan, David R Walt, Robert Soiffer, Vincent T Ho, Nicolas C Issa, Lindsey R Baden
August 27, 2022
Advanced Materials
Sprayable hydrogel for instant sealing of vascular anastomosis

Gonzalo Muñoz Taboada, Pere Dosta, Elazer R. Edelman, Natalie Artzi
August 30, 2022
Blood
Conformation of von Willebrand factor in shear flow revealed with stroboscopic single-molecule imaging

Hans T. Bergal, Yan Jiang, Darren Yang, Timothy A. Springer, Wesley P. Wong