Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

June 21, 2024
Entropy
Evolutionary Implications of Self-Assembling Cybernetic Materials with Collective Problem-Solving Intelligence at Multiple Scales

Benedikt Hartl, Sebastian Risi, Michael Levin
July 29, 2024
PNAS
Matrix stiffness-dependent regulation of immunomodulatory genes in human MSCs is associated with the lncRNA CYTOR

Justin J Lim, Kyle H Vining, David J Mooney, Benjamin J Blencowe
July 31, 2024
Lab on a Chip
Efficient discovery of antibody binding pairs using a photobleaching strategy for bead encoding

Shira Roth, Tom Ferrante, David R Walt
July 29, 2024
Nature Biotechnology
Signal amplification by cyclic extension enables high-sensitivity single-cell mass cytometry

Xiao-Kang Lun, Kuanwei Sheng, Xueyang Yu, Ching Yeung Lam, Gokul Gowri, Matthew Serrata, Yunhao Zhai, Hanquan Su, Jingyi Luan, Youngeun Kim, Donald E. Ingber, Hartland W. Jackson, Michael B. Yaffe & Peng Yin
July 17, 2024
Colloids and Surfaces B: Biointerfaces
3D printing assisted surface patterning process on acrylated hydrogels for contact guidance of fibroblasts

Amrita Natarajan, Suntae Kim, Gerardo Hernandez Moreno, Jeroen Eyckmans, Christopher S Chen, Derrick Dean, Vineeth M Vijayan
July 11, 2024
Chem
Rapid, Multiplexed, and Enzyme-Free Nucleic Acid Detection Using Programmable Aptamer-Based RNA Switches

Zhaoqing Yan, Amit Eshed, Anli A Tang, Nery R Arevalos, Zachary M Ticktin, Soma Chaudhary, Duo Ma, Griffin McCutcheon, Yudan Li, Kaiyue Wu, Sanchari Saha, Jonathan Alcantar-Fernandez, Jose L Moreno-Camacho, Abraham Campos-Romero, James J Collins, Peng Yin, Alexander A Green
March 22, 2024
Bioengineering & Translational Medicine
Vaccine adjuvants for infectious disease in the clinic

Morgan Goetz, Naaz Thotathil, Zongmin Zhao, Samir Mitragotri
July 22, 2024
Nature Communications
Protective alleles and precision healthcare in crewed spaceflight

Lindsay A. Rutter, Matthew J. MacKay, Henry Cope, Nathaniel J. Szewczyk, JangKeun Kim, Eliah Overbey, Braden T. Tierney, Masafumi Muratani, Ben Lamm, Daniela Bezdan, Amber M. Paul, Michael A. Schmidt, George M. Church, Stefania Giacomello & Christopher E. Mason
July 24, 2024
Experimental Dermatology
Comparative transcriptome analysis of acne vulgaris, rosacea, and hidradenitis suppurativa supports high-dose dietary zinc as a therapeutic agent

Li Li, Irshad Hajam, Jean S. McGee, Zhengkuan Tang, Ye Zhang, Nikil Badey, Esther Mintzer, Zhenrui Zhang, George Y. Liu, George M. Church, Yu Wang
July 15, 2024
Nature Communications
Efficient and reproducible generation of human iPSC-derived cardiomyocytes and cardiac organoids in stirred suspension systems

Maksymilian Prondzynski, Paul Berkson, Michael A. Trembley, Yashasvi Tharani, Kevin Shani, Raul H. Bortolin, Mason E. Sweat, Joshua Mayourian, Dogacan Yucel, Albert M. Cordoves, Beatrice Gabbin, Cuilan Hou, Nnaemeka J. Anyanwu, Farina Nawar, Justin Cotton, Joseph Milosh, David Walker, Yan Zhang, Fujian Lu, Xujie Liu, Kevin Kit Parker, Vassilios J. Bezzerides & William T. Pu
July 14, 2024
Biochemical and Biophysical Research Communications
Stress sharing as cognitive glue for collective intelligences: A computational model of stress as a coordinator for morphogenesis

Lakshwin Shreesha, Michael Levin
July 12, 2024
Nature Biotechnology
Template-independent enzymatic synthesis of RNA oligonucleotides

Daniel J. Wiegand, Jonathan Rittichier, Ella Meyer, Howon Lee, Nicholas J. Conway, Daniel Ahlstedt, Zeynep Yurtsever, Dominic Rainone, Erkin Kuru & George M. Church
July 5, 2024
Nucleic Acids Research
Multiplexed in situ protein imaging using DNA-barcoded antibodies with extended hybridization chain reactions

Yu Wang, Xiaoyu Liu, Yitian Zeng, Sinem K Saka, Wenxin Xie, Isabel Goldaracena, Richie E Kohman, Peng Yin, George M Church
July 5, 2024
Angiogenesis
A streamlined method to generate endothelial cells from human pluripotent stem cells via transient doxycycline-inducible ETV2 activation

Allen Chilun Luo, Jiuhai Wang, Kai Wang, Yonglin Zhu, Liyan Gong, Umji Lee, Xiang Li, Daniel M. Tremmel, Ruei-Zeng Lin, Donald E. Ingber, James Gorman & Juan M. Melero-Martin
July 5, 2024
Progress in Biophysics and Molecular Biology
Bioelectric pharmacology of cancer: A systematic review of ion channel drugs affecting the cancer phenotype

Karina Kofman, Michael Levin
June 20, 2024
Molecular Cell
A high-throughput synthetic biology approach for studying combinatorial chromatin-based transcriptional regulation

Miguel A Alcantar, Max A English, Jacqueline A Valeri, James J Collins
June 21, 2024
Biofabrication
A perfusable, vascularized kidney organoid-on-chip model

Katharina Kroll, Kimberly Homan, Sébastien G M Uzel, Mariana Mata, Kayla Wolf, Jonathan Eric Rubins, Jennifer A Lewis
June 22, 2024
Mass Spectrometry Based Single Cell Proteomics
Single-Cell Proteomics Analysis with Tecan Uno and SCREEN Workflow

Michael Lewandowski, Shad Morton, Matthew Blake, Erica Squires, Rushdy Ahmad, David R. Walt & Bogdan Budnik
June 20, 2024
Nature Methods
Collaborative ethics: innovating collaboration between ethicists and life scientists

Jeantine E. Lunshof & Julia Rijssenbeek
June 7, 2024
Nature Computational Science
Scalable design of orthogonal DNA barcode libraries

Gokul Gowri, Kuanwei Sheng & Peng Yin