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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

October 20, 2025
Developmental Cell
Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett’s Esophagus to adenocarcinoma

Michael K Strasser, David L Gibbs, Philippe Gascard, Joanna Bons, John W Hickey, Deng Pan, Joseph A Caruso, Xianhong Wang, Chira Chen-Tanyolac, Rosemary Bai, Christian M Schürch, Yuqi Tan, Sarah Black, Pauline Chu, Alican Ozkan, Nathan Basisty, Veena Sangwan, Jacob Rose, Samah Shah, Jordan B Burton, Sophie Camilleri-Broet, Pierre Olivier Fiset, Nicholas Bertos, Julie Berube, Haig Djambazian, Rui Li, Spyridon Oikonomopoulos, Daffolyn Rachael Fels Elliott, Sarah Vernovsky, Elee Shimshoni, Deborah Collyar, Ann Russell, Jiannis Ragoussis, Matthew D Stachler, James R Goldenring, Stuart A C McDonald, Donald E Ingber, Birgit Schilling, Garry P Nolan, Thea D Tlsty, Sui Huang, Lorenzo E Ferri
October 22, 2025
Nature
Mapping Plasmodium transitions and interactions in the Anopheles female

Yan Yan, Lisa H. Verzier, Elaine Cheung, Federico Appetecchia, Sandra March, Ailsa R. Craven, Esrah Du, Alexandra S. Probst, Tasneem A. Rinvee, Laura E. de Vries, Jamie Kauffman, Sangeeta N. Bhatia, Elisabeth Nelson, Naresh Singh, Duo Peng, W. Robert Shaw & Flaminia Catteruccia
October 13, 2025
Advanced Science
Aging as a Loss of Goal-Directedness: An Evolutionary Simulation and Analysis Unifying Regeneration with Anatomical Rejuvenation

Léo Pio-Lopez, Benedikt Hartl, Michael Levin
October 14, 2025
Journal of the American Chemical Society
Anfinsen Redux: Ribonuclease Folding in the Single-Molecule Regime

Arek V. Melkonian, Evans C. Wralstad, Ronald T. Raines, David R. Walt
October 2, 2025
Nano Letters
DNA Nanostructures for Modular Growth Factor Delivery and Peripheral Nerve Repair

Youngjin Choi, Su Jeong Park, Bo Kyung Cho, Jongmin Lee, Yejin Sung, Yang C. Zeng, Nakwon Choi, William M. Shih, Soo Hyun Kim, Dong-Hwee Kim, Seung-Woo Cho, Youngmee Jung, Ju Hee Ryu
October 2, 2025
Nature Nanotechnology
Convergence of nanotechnology and CRISPR-based diagnostics

Midori Johnston, Schan Dissanayake-Perera, James J. Collins, Molly M. Stevens & Can Dincer
September 19, 2025
iScience
Bioelectric characterization of senescing human keratinocytes

Hamid Sediqi, Michael Levin
October 7, 2025
Human Genomics
Genetic signatures of exceptional longevity: a comprehensive analysis of coding region single nucleotide polymorphisms (SNPs) in centenarians and supercentenarians

Audre Preena Maria Sundar Raj, Gayathri Selvakumar, James Clement, George M. Church & Sudhakar Sivasubramaniam
October 6, 2025
Journal of Controlled Release
Ultra-high concentration low-viscosity subcutaneous antibody formulations using ionic liquids

Anujan Ramesh, Metecan Erdi, Shuyang Zhang, Vineeth Chandran Suja, Samir Mitragotri, Bijay Singh
September 11, 2025
Frontiers in Bioengineering and Biotechnology
Refillable silicone pump with precise switching for timed therapeutic delivery

Naaz Thotathil, John J Amante, Micah Wingell, Grace W Hutter, Ultan Fallon, Yiling Fan, Keegan Mendez, Ellen T Roche, Cathal J Kearney
September 30, 2025
American Journal of Physiology: Cell Physiology
Ca2+ signal dynamics in maturing ureteric bud (UB) and collecting duct (CD) derived organoid tubules

Rolando Carrisoza-Gaytán, Abigail Daily, Kayla J. Wolf, Samia Lasaad, Anna Cantalupo, Pooja Nair, Ronald Van Gaal, Per Uhlén, Jennifer A. Lewis, and Lisa M. Satlin
March 18, 2025
Bioengineering & Translational Medicine
Transport physics-informed reinforcement learning agents deployed in standalone infusion pumps for managing multidrug delivery in critical care

V. Chandran Suja, A. L. H. S. Detry, N. M. Sims, D. E. Arney, S. Mitragotri, R. A. Peterfreund
April 16, 2025
Bioengineering & Translational Medicine
Cell therapies against brain tumors: Clinical development and emerging prospects

Tatsuya Fukuta, Suyog Shaha, Andres da Silva-Candal, Zongmin Zhao, Samir Mitragotri
September 2, 2025
Frontiers in Nutrition
Dietary flavonoids form supramolecular assemblies, alter biochemistry, and enhance cell resilience

Charles B Reilly, Sylvie G Bernier, Sanjid Shahriar, Viktor Horvath, Michael Lewandowski, Emilia Javorsky, Bogdan Budnik, Donald E Ingber
September 2, 2025
Frontiers in Psychology
Temporal depth in a coherent self and in depersonalization: theoretical model

Alexey Tolchinsky, Michael Levin, Chris Fields, Lancelot Da Costa, Rachael Murphy, Daniel Friedman, David Pincus
September 23, 2025
Advanced Healthcare Materials
Collagen Scaffold Viscoelasticity Regulates Muscle Cell Phenotype

Emily B. Roloson, Wei-Hung Jung, Stephanie L. McNamara, Catherine L. Van Stone, Nuria Lafuente-Gómez, Duncan M. Morgan, Georg N. Duda, David J. Mooney
November 1, 2024
Nature Biotechnology
Development of compact transcriptional effectors using high-throughput measurements in diverse contexts

Josh Tycko, Mike V. Van, Aradhana, Nicole DelRosso, Hanrong Ye, David Yao, Raeline Valbuena, Alun Vaughan-Jackson, Xiaoshu Xu, Connor Ludwig, Kaitlyn Spees, Katherine Liu, Mingxin Gu, Venya Khare, Adi Xiyal Mukund, Peter H. Suzuki, Sophia Arana, Catherine Zhang, Peter P. Du, Thea S. Ornstein, Gaelen T. Hess, Roarke A. Kamber, Lei S. Qi, Ahmad S. Khalil, Lacramioara Bintu & Michael C. Bassik
September 9, 2025
Lab on a Chip
Preclinical assessment of pan-influenza A virus CRISPR RNA therapeutics in a human lung alveolus chip

Yuncheng Man, Ryan R Posey, Haiqing Bai , Amanda Jiang, Pere Dosta, Diana Ocampo-Alvarado, Roberto Pleban, Jie Ji, Chaitra Belgur, Natalie Artzi, Donald E Ingber
August 26, 2025
Open Forum Infectious Diseases
Single-Cell and Plasma Proteomics Do Not Differentiate Patients With and Without SARS-CoV-2 Antigenemia in Convalescence in a Cohort of 100 Patients

Shaun Pienkos, Zoe Swank, Rebecca E Hamlin, Mallika Rao, Phillip Grant, Hector Bonilla, Karen Jacobson, Prasanna Jagannathan, Upinder Singh, David R Walt, Aruna Subramanian, Catherine Blish
September 10, 2025
International Journal of Systemic and Evolutionary Microbiology
Expansion and revision of the genus Xanthobacter and proposal of Roseixanthobacter gen. nov

Maximillian P M Soltysiak, Amogh P Jalihal, Caroline E Christophersen, Audrey L H Ory, Andrew D Lee, Jessica Boulton, Michael Springer