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Publications

Publications from our faculty. In order to find a specific publication, use the search box below to search by author, title, journal or date.

February 17, 2025
Communicative & Integrative Biology
Life, its origin, and its distribution: a perspective from the Conway-Kochen Theorem and the Free Energy Principle

Chris Fields, Michael Levin
February 1, 2025
Review of Scientific Instruments
A microfluidic sucrose gap device for electrical measurement of gap junction connectivity

J Dungan, J Mathews, M Levin, V Koomson
January 31, 2025
Science
Randomizing the human genome by engineering recombination between repeat elements

Jonas Koeppel, Raphael Ferreira, Thomas Vanderstichele, Lisa Maria Riedmayr, Elin Madli Peets, Gareth Girling, Juliane Weller, Pierre Murat, Fabio Giuseppe Liberante, Tom Ellis, George McDonald Church, Leopold Parts
January 31, 2025
Journal of Control Release
Immobilization of BMP-2 in porous hydrogels to spatially regulate osteogenesis

Junzhe Lou, Charlotte Meyer, Anqi Chen, David A Weitz, David J Mooney
February 1, 2025
SLAS Discovery
Comparative evaluation of cell-based assay technologies for scoring drug-induced condensation of SARS-CoV-2 nucleocapsid protein

Rui Tong Quek, Cyna R Shirazinejad, Christina L Young, Kierra S Hardy, Samuel Lim, Phillip J Elms, David T McSwiggen, Timothy J Mitchison, Pamela A Silver
January 29, 2025
Nature Portfolio Journal Women's Health
Cervical mucus in linked human Cervix and Vagina Chips modulates vaginal dysbiosis

Ola Gutzeit, Aakanksha Gulati, Zohreh Izadifar, Anna Stejskalova, Hassan Rhbiny, Justin Cotton, Bogdan Budnik, Sanjid Shahriar, Girija Goyal, Abidemi Junaid, Donald E Ingber
February 5, 2025
Lab on a Chip
TapeTech microfluidic connectors: adhesive tape-enabled solution for organ-on-a-chip system integration

Terry Chin, Abraham C I van Steen, Delaney Gray-Scherr, Jessica L Teo, Anish Vasan, Joshua Jeon, Jessica Shah, Aayush Pate, Amy E Stoddard, Jennifer L Bays, Jeroen Eyckmans, Christopher S Chen
January 23, 2025
EMBO Reports
Rapid human oogonia-like cell specification via transcription factor-directed differentiation

Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Bennett Wolf, Shrey Goel, Jessica Adams, Carl Ma, Sergiy Velychko, Ursula Widocki, Venkata Srikar Kavirayuni, Tianlai Chen, Sophia Vincoff, Edward Dong, Richie E Kohman, Mutsumi Kobayashi, Toshi Shioda, George M Church, Pranam Chatterjee
February 26, 2024
Nature Reviews Bioengineering
Machine learning for antimicrobial peptide identification and design

Fangping Wan, Felix Wong, James J Collins, Cesar de la Fuente-Nunez
January 26, 2025
Advanced Materials
Coaxial Direct Ink Writing of Cholesteric Liquid Crystal Elastomers in 3D Architectures

Alicia Ng, Rodrigo Telles, Katherine S Riley, Jennifer A Lewis, Caitlyn C Cook, Elaine Lee, Shu Yang
January 17, 2025
Physics of Life Reviews
Thoughts and thinkers: On the complementarity between objects and processes

Chris Fields, Michael Levin
January 27, 2025
Current Opinion in Biotechnology
Machine learning for synthetic gene circuit engineering

Sebastian Palacios, James J Collins, Domitilla Del Vecchio
January 17, 2025
ALTEX Alternatives to Animal Experimentation
Biology-inspired dynamic microphysiological system approaches to revolutionize basic research, healthcare and animal welfare

Uwe Marx, Sonja Beken, Zaozao Chen, Eva-Maria Dehne, Ann Doherty, Lorna Ewart, Suzanne C. Fitzpatrick, Linda G. Griffith, Zhongze Gu, Thomas Hartung, James Hickman, Donald E. Ingber, Seiichi Ishida, Jayoung Jeong, Marcel Leist, Lisa Levin, Donna L. Mendrick, Giorgia Pallocca, Stefan Platz, Marian Raschke, Lena Smirnova, Danilo A. Tagle, Martin Trapecar, Bas W. M. van Balkom, Janny van den Eijnden-van Raaij, Andries van der Meer, Adrian Roth
January 20, 2025
Nature Communications
Fluorescein-based SynNotch adaptors for regulating gene expression responses to diverse extracellular and matrix-based cues

Jeremy C. Tran, Christopher J. Kuffner, Alexander M. Marzilli, Ryan Emily Miller, Zachary E. Silfen, Jeffrey B. McMahan, D. Christopher Sloas, Christopher S. Chen & John T. Ngo
January 10, 2025
Science Advances
Perivascular cells function as key mediators of mechanical and structural changes in vascular capillaries

Cristiane M Franca, Maria Elisa Lima Verde, Alice Correa Silva-Sousa, Amin Mansoorifar, Avathamsa Athirasala, Ramesh Subbiah, Anthony Tahayeri, Mauricio Sousa, May Anny Fraga, Rahul M Visalakshan, Aaron Doe, Keith Beadle, McKenna Finley, Emilios Dimitriadis, Jennifer Bays, Marina Uroz, Kenneth M Yamada, Christopher Chen, Luiz E Bertassoni
August 13, 2024
Bioengineering & Translational Medicine
Immunotherapy against glioblastoma using backpack-activated neutrophils

Tatsuya Fukuta, Ninad Kumbhojkar, Supriya Prakash, Suyog Shaha, A. Da Silva-Candal, Kyung Soo Park, Samir Mitragotri
August 13, 2024
Bioengineering & Translational Medicine
Activated neutrophils: A next generation cellular immunotherapy

Ninad Kumbhojkar, Samir Mitragotri
January 13, 2025
American Journal of Respiratory Cell and Molecular Biology
Novel Immune Response Evasion Strategy to Redose Adeno-associated Viral Vectors and Prolong Survival in Surfactant Protein-B Deficient Mice

Martin H. Kang , Sylvia P Thomas , Caralyn Westley , Thomas Blouin , Liqun Xu , Ying Kai Chan , Erin Lisk , Sarah Allen , Arul Vadivel , Kennedy Nangle , Janani Ramamurthy , Yanlong Pei , Lunndon Lewis , Jessica J Chiang , Marty J Romeo , Silvia Vaena , Elizabeth C O'Quinn , Henry D Schrecker , Casey G Langdon , Paul J Nietert , George M Church , Jeffrey A Whitsett , Sarah K. Wootton , and Bernard Thébaud .
January 15, 2025
PNAS
Spatially programmed alignment and actuation in printed liquid crystal elastomers

Rodrigo Telles, Arda Kotikian, Guillaume Freychet, Mikhail Zhernenkov, Patryk Wąsik, Benjamin M Yavitt, Jorge-Luis Barrera, Caitlyn C Cook, Ronald Pindak, Emily C Davidson, Jennifer A Lewis
January 2, 2025
Science
Engineering synthetic phosphorylation signaling networks in human cells

Xiaoyu Yang, Jason W. Rocks, Kaiyi Jiang, Andrew J. Walters, Kshitij Rai, Jing Liu, Jason Nguyen, Scott D. Olson, Pankaj Mehta, James J. Collins, Nichole M. Daringer, and Caleb J. Bashor